I just finished reading the author's book "And Then I Thought I Was a Fish"[0] where he uses footnotes quite liberally.
I wish Amazon's ebook reader showed the footnotes in margin as his blog does. They weren't even shown on the same page.
Instead you had to follow a hyperlink to the last appendix of the book. You could then read the footnote w/o the original context; then you click a "back button" to get back to the text.
I hope more ebook readers find a use for the gigantic margins on widescreen displays. -- I would've preferred marginalized sidenotes over seeing two pages[1] of content.
A similar effect can be achieved using just CSS: float the marginal note left or right, set the width and apply (negative) horizontal margins to move it outside the main text block, and if required use relative positioning to shift it up so the baselines of the body text and the marginal note align.
I rarely stumble upon a web page that actually improves on the paper format but this one does.
[0] There must be a better way to phrase this.