This must be somehow hardware related. I went through 5 rMBPs, because I got bad screens 5 times in a row. There is an entire 600 page thread on that as well. That being said, none of the 5 had this problem. Does it do the same thing with a clean install of OSX?

You can clone your current installation to a USB hard drive and install OSX from scratch. Carbon Copy works well, or just use dd. If it does the same with a clean install, take it to Apple, and make them deal with it.