Yes, a story can have a message, but "Babbage" is a person, not a story. "This story's message" has a different agent from "Jim's message". Jim is always the _author_ in the second meaning.
"Babbage's message" made the title shorter, but also misleading. A complete title of "Babbage's heart-warming" would have made it even shorter, but I hope you're not advocating in favor of that!