The guidelines do not ban politically charged content; they only ban political content that is not "evidence of some interesting new phenomenon." Flagging all political content is not consistent with that.
Yup. There's no ban on political content across the board. Which is why I specifically said "politically charged articles". I'm in no way suggesting flagging all political content. If you think I am, please let me know what gives you that impression and I'll work to be clearer in the future.
From the guidelines:
Off-Topic: Most stories about politics, or crime, or sports, unless they're evidence of some interesting new phenomenon
Please avoid introducing classic flamewar topics unless you have something genuinely new to say about them.
I think flagging politically charged submissions—particularly those that have shown themselves to lead to largely repetitive non-constructive flame wars—is consistent with the guidelines. That second quote is from the comment guidelines, but I think it's fair to apply the same standard to submissions as well.
Edit to add: Are there recent topics on HN that you think have been unnecessarily flagged? Some that you've found particularly useful?
https://news.ycombinator.com/newsguidelines.html